{
  "_id": "6a1bd8dd1d7bb097a0a169b3",
  "Package": "redlistr",
  "Title": "Tools for the IUCN Red List of Ecosystems and Species",
  "Version": "2.0.0",
  "Authors@R": "c(\nperson(\"Calvin\", \"Lee\", , \"calvinkflee@gmail.com\", role = c(\"aut\"),\ncomment = c(\"Original functions and examples\", ORCID = \"0000-0001-8277-8614\")),\nperson(\"Nicholas\", \"Murray\", , \"murr.nick@gmail.com\", role = \"aut\",\ncomment = c(\"Original functions and examples\", ORCID = \"0000-0002-4008-3053\")),\nperson(\"Aniko\", \"Toth\", , \"anikobtoth@gmail.com\", role = c(\"cre\", \"aut\"),\ncomment = c(\"Updated functions, classes and methods\", ORCID = \"0000-0002-3063-1917\")),\nperson(\"José R.\", \"Ferrer-Paris\", , \"jr.ferrer.paris@gmail.com\", role = c(\"aut\"),\ncomment = c(\"Documentation, contributions to classes and methods\", ORCID = \"0000-0002-9554-3395\"))\n)",
  "Description": "A toolbox created by members of the International Union\nfor Conservation of Nature (IUCN) Red List of Ecosystems\nCommittee for Scientific Standards. Primarily, it is a set of\ntools suitable for calculating the metrics required for making\nassessments of species and ecosystems against the IUCN Red List\nof Threatened Species and the IUCN Red List of Ecosystems\ncategories and criteria. See the IUCN website for detailed\nguidelines, the criteria, publications and other information.",
  "License": "GPL (>=3)| file LICENSE",
  "URL": "https://github.com/red-list-ecosystem/redlistr,\nhttps://red-list-ecosystem.github.io/redlistr,\nhttp://red-list-ecosystem.github.io/redlistr/",
  "BugReports": "https://github.com/red-list-ecosystem/redlistr/issues",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/Needs/website": "rmarkdown",
  "LazyData": "true",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev",
  "Repository": "https://red-list-ecosystem.r-universe.dev",
  "Date/Publication": "2026-05-01 12:15:11 UTC",
  "RemoteUrl": "https://github.com/red-list-ecosystem/redlistr",
  "RemoteRef": "HEAD",
  "RemoteSha": "7fec3bf312518975a9aab43487af107a832c0dcf",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-31 06:27:58 UTC",
    "User": "root"
  },
  "Author": "Calvin Lee [aut] (Original functions and examples, ORCID:\n<https://orcid.org/0000-0001-8277-8614>),\nNicholas Murray [aut] (Original functions and examples, ORCID:\n<https://orcid.org/0000-0002-4008-3053>),\nAniko Toth [cre, aut] (Updated functions, classes and methods, ORCID:\n<https://orcid.org/0000-0002-3063-1917>),\nJosé R. Ferrer-Paris [aut] (Documentation, contributions to classes and\nmethods, ORCID: <https://orcid.org/0000-0002-9554-3395>)",
  "Maintainer": "Aniko Toth <anikobtoth@gmail.com>",
  "MD5sum": "82af38bbeb330f5b9b10f1050b8f18e5",
  "_user": "red-list-ecosystem",
  "_type": "src",
  "_file": "redlistr_2.0.0.tar.gz",
  "_fileid": "d7e098489c6edb318339b22c872983de8e81dd4aae91db85b5479efe9da024ad",
  "_filesize": 656299,
  "_sha256": "d7e098489c6edb318339b22c872983de8e81dd4aae91db85b5479efe9da024ad",
  "_created": "2026-05-31T06:27:58.000Z",
  "_published": "2026-05-31T06:44:45.481Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78705535396,
      "time": 247,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7314448707"
    },
    {
      "job": 78705535398,
      "time": 236,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314447496"
    },
    {
      "job": 78705535394,
      "time": 233,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7314524436"
    },
    {
      "job": 78705535404,
      "time": 181,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314520561"
    },
    {
      "job": 78705348534,
      "time": 209,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314421904"
    },
    {
      "job": 78705535397,
      "time": 143,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314437329"
    },
    {
      "job": 78705535424,
      "time": 186,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7314442163"
    },
    {
      "job": 78705535405,
      "time": 229,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7314446773"
    },
    {
      "job": 78705535420,
      "time": 172,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314440695"
    }
  ],
  "_buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/red-list-ecosystem/redlistr",
  "_commit": {
    "id": "7fec3bf312518975a9aab43487af107a832c0dcf",
    "author": "Anikó B. Tóth <anikobtoth@users.noreply.github.com>",
    "committer": "Anikó B. Tóth <anikobtoth@users.noreply.github.com>",
    "message": "minor bug fix\n",
    "time": 1777637711
  },
  "_maintainer": {
    "name": "Aniko Toth",
    "email": "anikobtoth@gmail.com",
    "login": "anikobtoth",
    "description": "Postdoctoral fellow at the Centre for Ecosystem Science of the University of New South Wales, Sydney, Australia. Researching ecosystem change and collapse.",
    "uuid": 29879048,
    "orcid": "0000-0002-3063-1917"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "terra",
      "version": ">= 1.8-54",
      "role": "Imports"
    },
    {
      "package": "sf",
      "version": ">= 1.0-21",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "units",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "mgcv",
      "role": "Imports"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "leaflet",
      "role": "Suggests"
    }
  ],
  "_owner": "red-list-ecosystem",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-06",
      "n": 1
    },
    {
      "week": "2026-12",
      "n": 4
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 38,
  "_contributors": [
    {
      "user": "anikobtoth",
      "count": 76,
      "uuid": 29879048
    },
    {
      "user": "calvinkflee",
      "count": 66,
      "uuid": 6404177
    },
    {
      "user": "nick-murray",
      "count": 31,
      "uuid": 12181309
    },
    {
      "user": "jrfep",
      "count": 24,
      "uuid": 3775163
    },
    {
      "user": "johnwilshire",
      "count": 1,
      "uuid": 1732458
    }
  ],
  "_userbio": {
    "uuid": 29559340,
    "type": "organization",
    "name": "IUCN Red List of Ecosystems Science Team"
  },
  "_downloads": {
    "count": 286,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/redlistr"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/red-list-ecosystem/redlistr",
  "_pkgdown": "https://red-list-ecosystem.github.io/redlistr",
  "_searchresults": 43,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/redlistr.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/red-list-ecosystem/redlistr",
  "_realowner": "red-list-ecosystem",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-07-07"
    },
    {
      "version": "1.0.1",
      "date": "2018-05-11"
    },
    {
      "version": "1.0.2",
      "date": "2018-11-02"
    },
    {
      "version": "1.0.3",
      "date": "2019-07-11"
    },
    {
      "version": "1.0.4",
      "date": "2023-10-03"
    }
  ],
  "_exports": [
    "bundle",
    "extrapolateEstimate",
    "futureAreaEstimate",
    "getAOO",
    "getArea",
    "getAreaChange",
    "getAreaEOO",
    "getAreaTrend",
    "getDeclineStats",
    "getEOO",
    "hist",
    "jplot",
    "list2table",
    "makeAOOGrid",
    "makeEOO",
    "plot",
    "sequentialExtrapolate",
    "show",
    "summary"
  ],
  "_datasets": [
    {
      "name": "a",
      "title": "Mangrove area combined",
      "object": "a",
      "class": [
        "data.frame"
      ],
      "fields": [
        "layer",
        "value",
        "area"
      ],
      "rows": 2,
      "table": true,
      "tojson": true
    },
    {
      "name": "a.2000",
      "title": "Mangrove distribution data",
      "object": "a.2000",
      "class": [
        "data.frame"
      ],
      "fields": [
        "layer",
        "value",
        "area"
      ],
      "rows": 1,
      "table": true,
      "tojson": true
    },
    {
      "name": "a.2017",
      "title": "Mangrove area",
      "object": "a.2017",
      "class": [
        "data.frame"
      ],
      "fields": [
        "layer",
        "value",
        "area"
      ],
      "rows": 1,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "a",
      "title": "Mangrove area combined",
      "topics": [
        "a"
      ]
    },
    {
      "page": "a.2000",
      "title": "Mangrove distribution data",
      "topics": [
        "a.2000"
      ]
    },
    {
      "page": "a.2017",
      "title": "Mangrove area",
      "topics": [
        "a.2017"
      ]
    },
    {
      "page": "AOOgrid-class",
      "title": "AOOgrid class",
      "topics": [
        "AOOgrid-class"
      ]
    },
    {
      "page": "as.list.AOOgrid",
      "title": "AOOgrid as.list",
      "topics": [
        "as.list.AOOgrid"
      ]
    },
    {
      "page": "as.list.EOO",
      "title": "EOO as.list",
      "topics": [
        "as.list.EOO"
      ]
    },
    {
      "page": "bundle",
      "title": "Compute AOO and EOO, return as table",
      "concept": [
        "synthesis functions"
      ],
      "topics": [
        "bundle"
      ]
    },
    {
      "page": "createGrid",
      "title": "Create empty Area of Occupancy (AOO) Grid.",
      "concept": [
        "AOO functions"
      ],
      "topics": [
        "createGrid"
      ]
    },
    {
      "page": "EOO-class",
      "title": "EOO class",
      "topics": [
        "EOO-class"
      ]
    },
    {
      "page": "extrapolateEstimate",
      "title": "Extrapolate Estimate",
      "concept": [
        "change_functions"
      ],
      "topics": [
        "extrapolateEstimate"
      ]
    },
    {
      "page": "futureAreaEstimate",
      "title": "Future Area Estimate",
      "concept": [
        "change_functions"
      ],
      "topics": [
        "futureAreaEstimate"
      ]
    },
    {
      "page": "getAOO",
      "title": "Compute Area of Occupancy (AOO)",
      "concept": [
        "AOO functions"
      ],
      "topics": [
        "getAOO"
      ]
    },
    {
      "page": "getArea",
      "title": "Calculates the Area of ecosystems in spatial data",
      "concept": [
        "Change functions"
      ],
      "topics": [
        "getArea"
      ]
    },
    {
      "page": "getAreaChange",
      "title": "Area change between two inputs in km2",
      "concept": [
        "Change functions"
      ],
      "topics": [
        "getAreaChange"
      ]
    },
    {
      "page": "getAreaEOO",
      "title": "Extracts the area from an EOO polygon",
      "concept": [
        "EOO functions"
      ],
      "topics": [
        "getAreaEOO"
      ]
    },
    {
      "page": "getAreaTrend",
      "title": "Calculate area trends of ecosystems",
      "concept": [
        "Change functions"
      ],
      "topics": [
        "getAreaTrend"
      ]
    },
    {
      "page": "getDeclineStats",
      "title": "Change statistics.",
      "concept": [
        "Change functions"
      ],
      "topics": [
        "getDeclineStats"
      ]
    },
    {
      "page": "getEOO",
      "title": "Calculates area of the created EOO polygon and returns a summary object with useful info.",
      "concept": [
        "EOO functions"
      ],
      "topics": [
        "getEOO"
      ]
    },
    {
      "page": "hist-AOOgrid-method",
      "title": "AOOgrid hist",
      "topics": [
        "hist,AOOgrid-method"
      ]
    },
    {
      "page": "jplot",
      "title": "Make elbow plot to check jitter iterations",
      "concept": [
        "AOO functions"
      ],
      "topics": [
        "jplot"
      ]
    },
    {
      "page": "list2table",
      "title": "Summarises a list of EOO or AOOgrid objects in a table",
      "concept": [
        "synthesis functions"
      ],
      "topics": [
        "list2table"
      ]
    },
    {
      "page": "makeAOOGrid",
      "title": "Create Area of Occupancy (AOO) grid for an ecosystem or species distribution",
      "concept": [
        "AOO functions"
      ],
      "topics": [
        "makeAOOGrid"
      ]
    },
    {
      "page": "makeEOO",
      "title": "Creates Extent of occurrence (EOO) Polygon",
      "concept": [
        "EOO functions"
      ],
      "topics": [
        "makeEOO"
      ]
    },
    {
      "page": "plot-AOOgrid-ANY-method",
      "title": "AOOgrid plot",
      "topics": [
        "plot,AOOgrid,ANY-method"
      ]
    },
    {
      "page": "plot-EOO-ANY-method",
      "title": "EOO plot",
      "topics": [
        "plot,EOO,ANY-method"
      ]
    },
    {
      "page": "plot-trend-ANY-method",
      "title": "trend plot",
      "topics": [
        "plot,trend,ANY-method"
      ]
    },
    {
      "page": "sequentialExtrapolate",
      "title": "Sequential extrapolation estimate",
      "concept": [
        "change_functions"
      ],
      "topics": [
        "sequentialExtrapolate"
      ]
    },
    {
      "page": "show-AOOgrid-method",
      "title": "AOOgrid show",
      "topics": [
        "show,AOOgrid-method"
      ]
    },
    {
      "page": "show-EOO-method",
      "title": "EOO show",
      "topics": [
        "show,EOO-method"
      ]
    },
    {
      "page": "summary-AOOgrid-method",
      "title": "AOOgrid summary",
      "topics": [
        "summary,AOOgrid-method"
      ]
    },
    {
      "page": "summary-EOO-method",
      "title": "EOO summary",
      "topics": [
        "summary,EOO-method"
      ]
    },
    {
      "page": "summary-trend-method",
      "title": "trend summary",
      "topics": [
        "summary,trend-method"
      ]
    },
    {
      "page": "top_pct",
      "title": "Identify positions of the bottom 1% of ecosystem area in AOO grid",
      "concept": [
        "AOO functions"
      ],
      "topics": [
        "top_pct"
      ]
    },
    {
      "page": "trend_fitting_functions",
      "title": "Fit linear model with log-link.",
      "topics": [
        "fit_glm_ll",
        "fit_lm_ll",
        "fit_spline",
        "trend_fitting_functions"
      ]
    },
    {
      "page": "trend-class",
      "title": "trend class",
      "topics": [
        "trend-class"
      ]
    }
  ],
  "_pkglogo": "https://github.com/red-list-ecosystem/redlistr/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/red-list-ecosystem/redlistr/raw/HEAD/README.md",
  "_rundeps": [
    "class",
    "classInt",
    "cli",
    "cpp11",
    "DBI",
    "dplyr",
    "e1071",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "KernSmooth",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "mgcv",
    "nlme",
    "pillar",
    "pkgconfig",
    "proxy",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "s2",
    "S7",
    "scales",
    "sf",
    "stringi",
    "stringr",
    "terra",
    "tibble",
    "tidyselect",
    "units",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "wk"
  ],
  "_vignettes": [
    {
      "source": "redlistr-vignette.Rmd",
      "filename": "redlistr-vignette.html",
      "title": "Calculating spatial metrics for IUCN RLE assessments",
      "author": "Aniko Toth, José R. Ferrer-Paris, Calvin K.F. Lee, Nicholas J. Murray",
      "engine": "knitr::rmarkdown",
      "headings": [
        "1. Introduction",
        "2. Importing data",
        "Alternative formats",
        "Plotting out data",
        "3. Basic information for the data",
        "Rasters with multiple ecosystems or layers",
        "4. Assessing Criterion A",
        "Area change",
        "Rate of change",
        "4. Assessing Criterion B (distribution size)",
        "Subcriterion B1 (calculating EOO)",
        "Subcriterion B2 (calculating AOO)",
        "One percent rule",
        "5. Final words"
      ],
      "created": "2016-07-19 03:35:34",
      "modified": "2026-05-01 11:23:23",
      "commits": 27
    },
    {
      "source": "get-started.Rmd",
      "filename": "get-started.html",
      "title": "Get started",
      "engine": "knitr::rmarkdown",
      "headings": [
        "What is this package for?",
        "Input data formats",
        "Outputs of the functions",
        "Using redlistr",
        "Elaborated examples"
      ],
      "created": "2026-03-22 21:34:12",
      "modified": "2026-03-22 21:34:12",
      "commits": 1
    }
  ],
  "_score": 7.292433298244022,
  "_indexed": true,
  "_nocasepkg": "redlistr",
  "_universes": [
    "red-list-ecosystem",
    "anikobtoth"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.0",
      "date": "2026-05-31T06:30:50.000Z",
      "distro": "noble",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "0e82ddde1eab4481c39377349779d36f78bb23a4f10236d7a1f2769d8337cd82",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.0",
      "date": "2026-05-31T06:30:46.000Z",
      "distro": "noble",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "84d458d0689944a6577c5e4c23f5aa6444e675907c371c4044a90e39e6222f44",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.0",
      "date": "2026-05-31T06:42:42.000Z",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "226c050f4a016b25e3b3ac5689bd4a99a290fa54d5a7311bd2a370bf4bc873b4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.0",
      "date": "2026-05-31T06:42:22.000Z",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "81bdf1b95aee5431318eec1246e6587a9e244cdc7e1e6b64058687da630b88f2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.0",
      "date": "2026-05-31T06:30:44.000Z",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "84a6ade17fb3dde426d37316f68eedada9f9c1c52ed275cf7c8ee0775e18b7bc",
      "status": "success",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.0",
      "date": "2026-05-31T06:29:41.000Z",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "9b804c431a0e876a8bc2c0b615842b5983e6c32238fe7dab57c405ea7bf4e73b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.0",
      "date": "2026-05-31T06:30:19.000Z",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "bd4d5802c90a278bd8e4c4e5fee96e2fb4a81bc7be9cd72f3ff31e2f4dccdbfa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.0",
      "date": "2026-05-31T06:29:31.000Z",
      "commit": "7fec3bf312518975a9aab43487af107a832c0dcf",
      "fileid": "e9c293f1c50bfbd1dd1f1adea4299ee238bef2bf2238421346a20dc7e507b697",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/red-list-ecosystem/actions/runs/26705306204"
    }
  ]
}